Welcome to fastBio’s documentation!¶
fastBio is a library for manipulating data and creating and training deep learning models for biological sequencing data. It is an extension of the fastai v1 library.
A number of pretrained models for biological sequencing data can be loaded directly through fastBio with the LookingGlass and LookingGlassClassifier classes. These models are available for download at the sister repository LookingGlass.
If you find fastBio or LookingGlass useful, please cite the preprint:
Hoarfrost, A., Aptekmann, A., Farfanuk, G. & Bromberg, Y. Shedding Light on Microbial Dark Matter with A Universal Language of Life. bioRxiv (2020). doi:10.1101/2020.12.23.424215. https://www.biorxiv.org/content/10.1101/2020.12.23.424215v2
Installation¶
You can install fastBio with pip (python 3 only):
pip3 install fastBio
Tutorial¶
See the fastBio tutorial in html or jupyter notebook form.